Difference between revisions of "XENLA Genome"
From Marcotte Lab
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|JGIv6 | |JGIv6 | ||
− | | | + | |2012 Jul. |
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|JGIv6a | |JGIv6a | ||
− | | | + | |2012 Jul. |
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|NIGv1 | |NIGv1 | ||
− | |2012 Nov | + | |2012 Nov. |
|2.88 Gbp | |2.88 Gbp | ||
|0.34 Mbp | |0.34 Mbp | ||
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|NIGv1ap | |NIGv1ap | ||
− | |2012 Nov | + | |2012 Nov. |
|3.27 Gbp | |3.27 Gbp | ||
|0.17 Mbp | |0.17 Mbp | ||
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|1.15 Mbp | |1.15 Mbp | ||
|5,714 | |5,714 | ||
− | |JGI7;Internal Use Only | + | |JGI7;Internal Use Only. |
|- | |- | ||
|JGIv7b | |JGIv7b | ||
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|3.49 Mbp | |3.49 Mbp | ||
|2,598 | |2,598 | ||
− | |JGI7.2;Internal Use Only | + | |JGI7.2;Internal Use Only. |
|} | |} | ||
Revision as of 14:14, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2010 Dec. | 2.30 Gbp | 8 kbp | 385,933 | Internal Use Only. |
JGIv5 | 2011 Oct. | 2.84 Gbp | 0.28 Mbp | 16,625 | Released in Xenopus PI Meeting. |
JGIv6 | 2012 Jul. | Officially released in XenBase. | |||
JGIv6a | 2012 Jul. | Officially released in XenBase. | |||
NIGv1 | 2012 Nov. | 2.88 Gbp | 0.34 Mbp | 14,260 | Original name is 'xl.v1soap'; Internal Use Only. |
NIGv1ap | 2012 Nov. | 3.27 Gbp | 0.17 Mbp | 39,283 | Original name is 'xl.v3ap'(AllPath?); Internal Use Only. |
NIGv1m | 2012 Nov. | 2.84 Gbp | 0.28 Mbp | 82,132 | Original name is 'xl.v5m'; Internal Use Only. |
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | 2.72 Gbp | 1.15 Mbp | 5,714 | JGI7;Internal Use Only. |
JGIv7b | 2013 May | 2.78 Gbp | 3.49 Mbp | 2,598 | JGI7.2;Internal Use Only. |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair