Difference between revisions of "TXGP RNAseq assembly"
From Marcotte Lab
(→Dataset for RNA-seq assembly) |
(→Dataset for RNA-seq assembly) |
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Line 6: | Line 6: | ||
!Samples | !Samples | ||
!Reads | !Reads | ||
− | !Assembled | + | !Assembled Tx(raw) |
!''X. laevis'' genes | !''X. laevis'' genes | ||
!''X. tropicalis'' genes | !''X. tropicalis'' genes | ||
Line 15: | Line 15: | ||
|Nirav Amin, Frank Conlon (UNC) | |Nirav Amin, Frank Conlon (UNC) | ||
|2 <br/>(no rep) | |2 <br/>(no rep) | ||
− | | | + | |~30M per sample<br/> (75bp, single) <br/> 61M total |
|591,321 | |591,321 | ||
|13,523 | |13,523 |
Revision as of 12:07, 15 March 2012
Dataset for RNA-seq assembly
Dataset | Contributor | Samples | Reads | Assembled Tx(raw) | X. laevis genes | X. tropicalis genes | H. sapiens genes |
---|---|---|---|---|---|---|---|
Amin201106_XENLA | Nirav Amin, Frank Conlon (UNC) | 2 (no rep) |
~30M per sample (75bp, single) 61M total |
591,321 | 13,523 | 10,225 | 11,540 |
Park201106_XENLA | Tae Joo Park, Richard Harland (UC Berkeley) | 5 (no rep) |
.. | .. | .. | .. | .. |
TXGP201107_XENLA | TXGP | 2 (1x2 rep) |
.. | .. | .. | .. | .. |
Chung201110_XENLA | Meii Chung, John Wallingford (UT Austin) | 4 (2x2 rep) |
.. | .. | .. | .. | .. |
Quigley201112_XENLA | Ian Quigley, Christopher R. Kintner (Salk Institute) | 9 (unknown rep) |
.. | .. | .. | .. | .. |
Jarikji201201_XENLA | Zeina Jarikji, Marko Horb (MBL) | 15 (5x3 rep) |
.. | .. | .. | .. | .. |
TeperekTkacz201202_XENLA | Marta Teperek-Tkacz, John Gurdon (Gurdon Institute) | 1 (no rep) |
.. | .. | .. | .. | .. |