Difference between revisions of "TXGP RNAseq assembly"
From Marcotte Lab
(→Dataset for RNA-seq assembly) |
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|TXGP201107_XENLA | |TXGP201107_XENLA | ||
|TXGP | |TXGP | ||
− | |2 ( | + | |2 <br/>(1x2 rep) |
|.. | |.. | ||
|.. | |.. | ||
Line 47: | Line 47: | ||
|Chung201110_XENLA | |Chung201110_XENLA | ||
|Meii Chung, John Wallingford (UT Austin) | |Meii Chung, John Wallingford (UT Austin) | ||
− | |4 ( | + | |4 <br/>(2x2 rep) |
|.. | |.. | ||
|.. | |.. | ||
Line 58: | Line 58: | ||
|Quigley201112_XENLA | |Quigley201112_XENLA | ||
|Ian Quigley, Christopher R. Kintner (Salk Institute) | |Ian Quigley, Christopher R. Kintner (Salk Institute) | ||
− | |9 (unknown rep) | + | |9<br/>(unknown rep) |
|.. | |.. | ||
|.. | |.. | ||
Line 69: | Line 69: | ||
|Jarikji201201_XENLA | |Jarikji201201_XENLA | ||
|Zeina Jarikji, Marko Horb (MBL) | |Zeina Jarikji, Marko Horb (MBL) | ||
− | |15 ( | + | |15<br/>(5x3 rep) |
|.. | |.. | ||
|.. | |.. | ||
Line 80: | Line 80: | ||
|TeperekTkacz201202_XENLA | |TeperekTkacz201202_XENLA | ||
|Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) | |Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) | ||
− | |1 (no rep) | + | |1<br/>(no rep) |
|.. | |.. | ||
|.. | |.. |
Revision as of 12:03, 15 March 2012
Dataset for RNA-seq assembly
Dataset | Contributor | Samples | Reads | Assembled transcripts(raw) | X. laevis genes | X. tropicalis genes | H. sapiens genes |
---|---|---|---|---|---|---|---|
Amin201106_XENLA | Nirav Amin, Frank Conlon (UNC) | 2 (no rep) |
28~33M (75bp, single) |
591,321 | 13,523 | 10,225 | 11,540 |
Park201106_XENLA | Tae Joo Park, Richard Harland (UC Berkeley) | 5 (no rep) |
.. | .. | .. | .. | .. |
TXGP201107_XENLA | TXGP | 2 (1x2 rep) |
.. | .. | .. | .. | .. |
Chung201110_XENLA | Meii Chung, John Wallingford (UT Austin) | 4 (2x2 rep) |
.. | .. | .. | .. | .. |
Quigley201112_XENLA | Ian Quigley, Christopher R. Kintner (Salk Institute) | 9 (unknown rep) |
.. | .. | .. | .. | .. |
Jarikji201201_XENLA | Zeina Jarikji, Marko Horb (MBL) | 15 (5x3 rep) |
.. | .. | .. | .. | .. |
TeperekTkacz201202_XENLA | Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) | 1 (no rep) |
.. | .. | .. | .. | .. |